Computer Science meetings & conferences

International Conference in Modeling Health Advances (ICMHA'12)

San Francisco, USA, 24-26 October, 2012

The International Conference in Modeling Health Advances 2012 will take place in San Francisco, USA, 24-26 October, 2012.

A host of new diseases, like HIV/AIDS, BSE, Avian Flu, West Nile Virus and others have appeared on the scene during the last twenty five years and undoubtedly, more will come in the coming years. To tackle these illnesses, the cooperation of modelers, mathematicians, statisticians, computer scientists, and others, and of researchers from the medical community is absolutely essential. Modeling is important because it gives important insight into the method of treatment. In the case of HIV/AIDS, for example, mathematical modeling indicated that a combination of both protease inhibitors and reverse transcriptase inhibitors would be far more effective than any one of these two drugs.

The purpose of this conference is to bring all the people working in the area of epidemiology under one roof and encourage mutual interaction.

The conference ICMHA'12 is held under the World Congress on Engineering and Computer Science WCECS 2012. The WCECS 2012 is organized by the International Association of Engineers (IAENG), a non-profit international association for engineers and computer scientists. The congress has the focus on the frontier topics in the theoretical and applied engineering and computer science subjects. The last IAENG conference has attracted more than five hundred participants from over 30 countries. All submitted papers will be under peer review and accepted papers will be published in the conference proceeding (ISBN: 978-988-19251-6-9). The abstracts will be indexed and available at major academic databases. The accepted papers will also be considered for publication in the special issues of the journal Engineering Letters, in IAENG journals and in edited books by publishers like Springer.

Managing Interoperability & compleXity in Health Systems

held in conjunction with the 21st ACM International Conference on Information and Knowledge Management, CIKM’12

October 29 to November 2, 2012, Maui, Hawaii, USA

Topics of interest, include but are not limited to:

-- Bio-medical Data-Mining, Information retrieval and extraction and NLP on biomedical text

-- Inference and statistical Models of diseases & Multimorbidity

-- Clinical Information Retrieval, Management and Normalization

-- Medical Knowledge Representation and Reasoning, Expert and Clinical Decision Support Systems -- Interoperability in Distributed healthcare Systems

-- Clinical Information and Interoperability Standards (e.g. HL7) Clinical Terminologies, Classifications (e.g. ICD 10) and
biomedical ontologies (e.g. SNOMED - CT)

-- Hospital Enterprise Information Management Systems, Electronic Health Record, (EHR), Clinical Document Architecture

International Society for Disease Surveillance Annual Conference

The ISDS Annual Conference is the premier event dedicated to the advancement of the science and practice of biosurveillance. This year’s theme, Expanding Collaborations to Chart a New Course in Public Health Surveillance, will highlight the importance of working together across agencies, sectors, and disciplines to improve surveillance methods and population health outcomes. The conference will be held at the Sheraton San Diego Hotel and Marina in San Diego, CA, December 4-5, 2012, with Pre-Conference Workshops on December 3rd.

The ISDS Conference draws professionals from a broad range of disciplines— epidemiology and computer science to mathematical modeling and health policy—to learn and contribute the latest achievements, methodologies, best practices, conceptual frameworks, and technical innovations in the rapidly evolving field of biosurveillance. This year's conference will provide fertile ground for cultivating new ideas and partnerships with roundtable discussions, panels and other opportunities to collaborate.

The scope of this conference includes all of the components, policies, methods, practices, infrastructure, research and evaluation related to timely surveillance of communicable diseases, chronic diseases and injuries. This includes notifiable conditions, adverse events and emerging/novel threats; biological, chemical, and radiological health threats; plant, animal, and food surveillance; and environmental monitoring.

International Federation for Information Processing/International Medical Informatics Association International Working Conference on Interfacing Bio- and Medical Informatics

27 September 2012 Amsterdam, the Netherlands

From 24 to 26 September 2012 the International Federation for Information Processing (IFIP) is having its World Computer Congress WCC2012 in Amsterdam, the Netherlands (www.wcc-2012.org). During the WCC2010 conference in Brisbane, Australia, IFIP and the International Medical Informatics Association (IMIA) organized a joint conference for the first time in their history. Also this time a joint one-day associated meeting will be held on Thursday 27 September. The topic of this meeting will be the link between bioinformatics and medical informatics. IFIP’s Working Groups 5.13 Bioinformatics and its applications and IMIA’s Working Group on Informatics in Genomic Medicine (IGM) are working in this area and supporting this event.

Contact
Prof.dr. Arie Hasman e-mail: a.hasman@amc.uva.nl

Conference topics

Applications:

Personalized medicine

Cancer informatics

Population genetics

Bioinformatics approaches for diseases study

Genomics and proteomics in medicine

Analysis of gene expression, mutation, variations and next generation sequencing

Linking genotype with phenotype

Tools:

Databases, data management and integration

Query languages, information retrieval, interoperability, biomedical ontologies and semantics

Knowledge discovery, machine learning, pattern recognition and text mining

Data visualization

High-performance, grid and cloud computing

Annual Biomedical Research Conference for Minority Students

November 7-10, 2012 San Jose, California

ABRCMS
American Society for Microbiology Education Department
1752 N Street, NW
Washington, DC 20036

Ph: 202-942-9348
Fax: 202-403-3513

Email:abrcms@asmusa.org

1st International Workshop on Mining Scientific Publications

Held in conjuction with JCDL 2012 (ACM/IEEE Joint Conference on Digital Libraries).

June 14, 2012 - Washington, DC

Digital libraries that store scientific publications are becoming increasingly central to the research process. They are not only used for traditional tasks, such as finding and storing research outputs, but also as a source for discovering new research trends or evaluating research excellence. With the current growth of scientific publications deposited in digital libraries, it is no longer sufficient to provide only access to content. To aid research it is especially important to improve the process of how research is being done.

The recent development in natural language processing, information retrieval and the semantic web make it possible to transform the way we work with scientific publications. However, in order to be able to improve these technologies and carry out experiments, researchers need to be able to easily access and use large databases of scientific publications.

This workshop aims to bring together people from different backgrounds who:

(a) are interested in analysing and mining databases of scientific publications,
(b) develop systems that enable such analysis and mining of scientific databases or
(c) who develop novel technologies that improve the way research is being done.

TOPICS

The topics of the workshop will be organised around the following three themes:

Infrastructures, systems, datasets or APIs that enable analysis of large volumes of scientific publications.
Semantic enrichment of scientific publications by means of text-mining, crowdsourcing or other methods.
Analysis of large databases of scientific publications to identify research trends, high impact, cross-fertilisation between disciplines, research excellence etc.

Topics of interest relevant to theme 1 include, but are not limited to:

Systems, services, datasets or APIs for accessing scientific publications and/or research data. The existence of datasets, services, systems and APIs (in particular those that are open) providing access to large volumes of scientific publications and their metadata is an essential prerequisite for being able to research and develop new technologies that can transform the way people do research. We invite papers presenting new systems, services, APIs or datasets that enable people to access databases of scientific publications and carry out their analysis. Papers addressing Open Access are of a special interest. We also invite papers that discuss issues and current challenges in design of these systems or address the issues of accessing and managing scientific publications and/or research datasets.

Topics of interest relevant to theme 2 include, but are not limited to:

Novel information extraction and text-mining approaches to semantic enrichment of publications. This might range from mining publication structure, such as title, abstract, authors, citation information etc. to more challenging tasks, such as extracting names of applied methods, research questions (or scientific gaps), identifying parts of the scholarly discourse structure etc.

Automatic categorization and clustering of scientific publications. Methods that can automatically categorize publications according to an established subject-based classification/taxonomy (such as Library of Congress classification, UNESCO thesaurus, DOAJ subject classification, Library of Congress Subject Headings) are of particular interest. Other approaches might involve automatic clustering or classification of research publications according to various criteria.

New methods and models for connecting and interlinking scientific publications. Scientific publications in digital libraries are not isolated islands. Connecting publications using explicitly defined citations is very restrictive and has many disadvantages. We are interested in innovative technologies that can automatically connect and interlink publications or parts of publications, according to various criteria, such as semantic similarity, contradiction, argument support or other relationship types.

Models for semantically representing and annotating publications. This topic is related to aspects of semantically modeling publications and scholarly discourse. Models that are practical with respect to the state-of-the-art in Natural Language Processing (NLP) technologies are of special interest.
Semantically enriching/annotating publications by crowdsourcing. Crowdsourcing can be used in innovative ways to annotate publications with richer metadata or to approve/disapprove annotations created using text-mining or other approaches. We welcome papers that address the following questions: (a) what incentives should be provided to motivate users in contributing metadata, (b) how to apply crowdsourcing in the specialized domains of scientific publications, (c) what tasks in the domain of organising scientific publications is crowdsourcing suitable for and where it might fail, (d) other relevant crowdsourcing topics relevant to the domain of scientific publications.

Topics of interest relevant to theme 3 include, but are not limited to:

New methods, models and innovative approaches for measuring impact of publications. The most widely used metrics for measuring impact are based on citations. However, counting citations does not take into account the publication content and the qualitative nature of the citation. In addition, there is a delay between the publication and the measurable impact in citations. We in particular encourage papers addressing new ways of evaluating publications’ impact beyond standard citation measures.

New methods for measuring performance of researchers. Methods for assessing impact of a publication can often be extended to methods that can assess the impact of individual researchers. However, there are also other criteria for measuring impact in addition to publications, such as the development and publication of research data, economical and market impact, that should also be taken into account. We welcome papers addressing these aspects.

New methods for measuring impact of research groups. The same as for impact of individual researchers holds for research communities.
Methods for identifying research trends and cross-fertilization between research disciplines. Identifying research trends should allow discovering newly emerging disciplines or it should help to explain why certain fields are attracting the attention of a wider research community. Such monitoring is important for research funders and governments in order to be able to quickly respond to new developments. We invite papers discussing new methods for identifying trends and cross-fertilization between research disciplines using methods ranging from social network analysis and text- and data-mining to innovative visualization approaches.

Application of mining from scientific databases. New methods and models developed for mining from scientific publications can be applied in many different scenarios, such as improving access to scientific publications, providing exploratory search in digital collections, identifying experts. We encourage papers describing innovative approaches that use scientific publications and data to solve real-world problems.

EXPECTED AUDIENCE

The workshop on Mining Scientific Publications aims to bring together researchers, digital library developers and practitioners from government and industry to address the current challenges in the domain of mining scientific publications.

Fifth International Symposium on Semantic Mining in Biomedicine (SMBM 2012)

September 3rd and 4th, 2012 Institute of Computational Linguistics, University of Zurich, Switzerland

The 5th International Symposium on Semantic Mining in Biomedicine (SMBM) 3rd-4th September, 2012 will be held at the Institute of Computational Linguistics, University of Zurich, Switzerland. Support is provided by the projects SASEBio/OntoGene (SNF105315_130558/1) and MANTRA (EU FP7).

SMBM 2012 aims to bring together researchers from text and data mining in biomedicine, medical, bio- and chemoinformatics, and researchers from biomedical ontology design and engineering.

SMBM 2012 is the follow-up event of SMBM 2010 (EBI, U.K.), SMBM 2008 (University of Turku, Finland), SMBM 2006 (University of Jena, Germany), and SMBM 2005 (EBI, U.K.).

Selected papers will be considered for publication in a special issue of the Journal of Biomedical Semantics (JBMS).

[contact the organization committee via smbmzurich @ gmail.com]

Fourteenth International ACM SIGACCESS Conference on Computers and Accessibility

ASSETS 2012 will be held in Boulder, Colorado, USA (October 22-24, 2012)

The ASSETS conference explores the design, evaluation, and use of computing and information technologies to benefit people with disabilities and older adults. ASSETS is the premier forum for presenting innovative research on mainstream and specialized assistive technologies, accessible computing, and assistive applications of computer, network, and information technologies. This includes the use of technology by and in support of:

Individuals with hearing, sight and other sensory impairments
Individuals with motor impairments
Individuals with memory, learning and cognitive impairments
Individuals with multiple impairments
Older adults with diverse capabilities
Professionals who work with these populations

Mathematical and Computational Medicine Conference 2012

Saturday December 1 2012 - Wednesday December 5 2012 Xcaret, Mexico

The purpose of the Zing Conference on Mathematical and Computational Medicine is to bring together eminent scholars with expertise in various fields of mathematical and computational medicine, as well as experimentalists and medical doctors interested in application of computational methods in clinical studies. The mathematical and computational medicine is now one of the most important and rapidly growing fields of modern medicine, and will become even more important in nearest future, when the cost of individual human gene sequencing becomes affordable for mass-scale clinical use (The $1000 Human Genome). New sequencing techniques, such as RNA-Seq produce enormous amount of information on the transcriptome in healthy and diseased cells, that need a development of new mathematical and computational methods to extract the most important medical information. The scope of the proposed Zing Conference will cover many different fields mathematical and computational medicine and biomedical informatics, such as genetics, genomics, epigenetics, and epigenomics of various diseases including mental and learning disorders, autism, and somatic diseases, with a special emphasis on cancer, protein misfolding disorders related to amyloid formation in neurogenerative diseases (such as Alzheimer's and Parkinson's disease), gene regulation, biomarker development, computer aided drug development, computational pharmacodynamics, computational immunology, systems biology and its extension to systems medicine, machine learning methods in application to biomedical data, applicability of computational methods in personalized medicine, and regenerative medicine. A special session will be devoted to errors in measurements of biomedical data and statistical evidence-based medicine.

For general queries about conference attendance, registration, payment, accommodation, etc. please email info~at~zingconferences.com (replace '~at~' with '@').

ICBO 2012: 3rd International Conference on Biomedical Ontology

July 22-25, 2012 Graz, Austria

Ontologies are increasingly used in biology and medicine, and their use in annotation of both clinical and experimental data is now common technique in integrative translational research. They are being developed for the description of biological and biomedical phenomena. To be maximally effective, such ontologies must work well together. As ontologies become more commonly used, the problems involved in achieving coordination in ontology development become ever more urgent. This conference addresses these problems. It brings together representatives of all major communities involved in the development and application of ontologies in biomedicical research, health care, and related areas. In addition to papers, the conference will feature workshops and tutorials, as well as software demonstrations and a doctoral symposium.

ICBO 2012 is collocated with FOIS 2012, the seventh Conference on Formal Ontologies in Information Systems. This conference series focuses on the systematization and elaboration of ontologies and associated reasoning techniques. The discipline of formal ontology is now applied to such diverse domains as artificial intelligence, computational linguistics, bioinformatics, GIS, knowledge engineering, information retrieval, and the Semantic Web. FOIS is intended to gather researchers with an interest in formal ontology, where both theoretical issues and concrete applications can be explored in an interdisciplinary spirit.

Chairs: Ronald Cornet, Robert Stevens, Melanie Courtot, Ludger Jansen, Trish Whetzel, Janna Hastings