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15 calls for papers / meetings & conferences listed in Computer Science 

Call for Papers: International Conference in Modeling Health Advances (ICMHA'12)
United States
California
07/02/2012

Call for Papers: International Conference in Modeling Health Advances (ICMHA'12)

San Francisco, USA, 24-26 October, 2012

The International Conference in Modeling Health Advances 2012 will take place in San Francisco, USA, 24-26 October, 2012.

A host of new diseases, like HIV/AIDS, BSE, Avian Flu, West Nile Virus and others have appeared on the scene during the last twenty five years and undoubtedly, more will come in the coming years. To tackle these illnesses, the cooperation of modelers, mathematicians, statisticians, computer scientists, and others, and of researchers from the medical community is absolutely essential. Modeling is important because it gives important insight into the method of treatment. In the case of HIV/AIDS, for example, mathematical modeling indicated that a combination of both protease inhibitors and reverse transcriptase inhibitors would be far more effective than any one of these two drugs.

The purpose of this conference is to bring all the people working in the area of epidemiology under one roof and encourage mutual interaction.

The conference ICMHA'12 is held under the World Congress on Engineering and Computer Science WCECS 2012. The WCECS 2012 is organized by the International Association of Engineers (IAENG), a non-profit international association for engineers and computer scientists. The congress has the focus on the frontier topics in the theoretical and applied engineering and computer science subjects. The last IAENG conference has attracted more than five hundred participants from over 30 countries. All submitted papers will be under peer review and accepted papers will be published in the conference proceeding (ISBN: 978-988-19251-6-9). The abstracts will be indexed and available at major academic databases. The accepted papers will also be considered for publication in the special issues of the journal Engineering Letters, in IAENG journals and in edited books by publishers like Springer.

Important Dates:
Draft Paper Submission Deadline: 2 July, 2012
Camera-Ready Papers Due & Registration Deadline: 30 July, 2012
ICMHA 2012: 24-26 October, 2012

Bioinformatician, Biologist, Biostatistician, Computer Scientist, Epidemiologist, Information Scientist, Physician Researcher, Public Health Expert, Virologist
Call for Papers: Managing Interoperability & compleXity in Health Systems
United States
Hawaii
06/29/2012

Call for Papers: Managing Interoperability & compleXity in Health Systems

held in conjunction with the 21st ACM International Conference on Information and Knowledge Management, CIKM’12

October 29 to November 2, 2012, Maui, Hawaii, USA

Workshop Submissions Due: June 29, 2012

Topics of interest, include but are not limited to:

-- Bio-medical Data-Mining, Information retrieval and extraction and NLP on biomedical text

-- Inference and statistical Models of diseases & Multimorbidity

-- Clinical Information Retrieval, Management and Normalization

-- Medical Knowledge Representation and Reasoning, Expert and Clinical Decision Support Systems -- Interoperability in Distributed healthcare Systems

-- Clinical Information and Interoperability Standards (e.g. HL7) Clinical Terminologies, Classifications (e.g. ICD 10) and
biomedical ontologies (e.g. SNOMED - CT)

-- Hospital Enterprise Information Management Systems, Electronic Health Record, (EHR), Clinical Document Architecture

To submit your paper, go to:

https://www.easychair.org/conferences/?conf=mixhs12

Biostatistician, Computer Scientist, Informatician, Information Scientist, Physician Researcher
Call for Abstracts: International Society for Disease Surveillance Annual Conference
United States
California
09/06/2012

Call for Abstracts: International Society for Disease Surveillance Annual Conference

The ISDS Annual Conference is the premier event dedicated to the advancement of the science and practice of biosurveillance. This year’s theme, Expanding Collaborations to Chart a New Course in Public Health Surveillance, will highlight the importance of working together across agencies, sectors, and disciplines to improve surveillance methods and population health outcomes. The conference will be held at the Sheraton San Diego Hotel and Marina in San Diego, CA, December 4-5, 2012, with Pre-Conference Workshops on December 3rd.

The ISDS Conference draws professionals from a broad range of disciplines— epidemiology and computer science to mathematical modeling and health policy—to learn and contribute the latest achievements, methodologies, best practices, conceptual frameworks, and technical innovations in the rapidly evolving field of biosurveillance. This year's conference will provide fertile ground for cultivating new ideas and partnerships with roundtable discussions, panels and other opportunities to collaborate.

The scope of this conference includes all of the components, policies, methods, practices, infrastructure, research and evaluation related to timely surveillance of communicable diseases, chronic diseases and injuries. This includes notifiable conditions, adverse events and emerging/novel threats; biological, chemical, and radiological health threats; plant, animal, and food surveillance; and environmental monitoring.

Questions regarding the Call for Abstracts may be sent to Tera Reynolds, ISDS Program Manager.

Submission deadline: September 6, 2012 (11:59pm Eastern Daylight Time)

Authors notified of acceptance: October 3, 2012

Pre-Conference Workshops: December 3, 2012

Annual Conference: December 4-5, 2012

Submission Types

Note: All abstracts for the ISDS Conference will be submitted using ScholarOne. There is a limit of 4810 characters for the text of your submission. The character count includes spaces. The character count WILL include title, authors, institutions, tables, and images, but WILL NOT include presenting author brief biographical summaries (bios) or the abstract summary that will be used in the conference program.

Oral

All abstracts submitted for oral presentation are automatically considered for poster presentation as well. Include the following components when submitting an abstract for oral presentation:

· Title (85 characters MAX)

· Objective

· Introduction

· Methods

· Results

· Conclusions

· Acknowledgements

· References

· Names and affiliations of authors

· Brief bio of lead author/intended presenter (450 characters/75 words)

· Brief summary (600 characters/100 words) of submission to be used in conference program

Poster

Include the following components when submitting an abstract for poster presentation:

· Title (85 characters MAX)

· Objective

· Introduction

· Methods

· Results

· Conclusions

· Acknowledgements

· References

· Names and affiliations of authors

· Brief bio of lead author/intended presenter (450 characters/75 words)

· Brief summary (600 characters/100 words) of submission (for potential inclusion in conference program)

Panel *New for 2012*

Panel topics should be a specific aspect of design, theory, application, or experience pertaining to the science or practice of biosurveillance. Suggested panels should be comprised of no more than four participants and a moderator. A typical panel session will consist of four 15 minute presentations, each followed by 5 minutes of questions, with 10 minutes for closing discussion (presentation lengths will be subject to change based on final agenda). When submitting an abstract for a panel, include the following components:

· Title (85 characters MAX)

· Objective

· Introduction

· Panel description

· How the moderator intends to engage the audience in discussions on the panel topic

· Names of panel presenters, moderator and affiliations

· Brief bios for each panel presenter and moderator (450 characters/75 words each) for abstract reviewers to assess appropriateness to serve on the panel for the described topic

· Brief summary (600 characters/100 words) of panel to be used in conference program

Roundtable *New for 2012*

Roundtables can have up to three facilitators to briefly introduce the topic of interest and facilitate active discussion among attendees. Roundtables must be discussion-oriented rather than didactic, lecture-driven sessions. Roundtable discussions will be 60-90 minutes (depending on final agenda). When submitting an abstract for a roundtable, include the following components:

· Title (85 characters MAX)

· Objective

· Introduction

· Roundtable description

· How the facilitator intends to engage the audience in the roundtable discussion, including sample questions

· Names of facilitators and affiliations

· Brief bios for each facilitator (450 characters/75 words each) for abstract reviewers to assess appropriateness to lead a discussion on the described topic

· Brief summary (600 characters/100 words) of roundtable to be used in conference program

System Showcase Demonstrations *New for 2012*

System showcase demonstrations will be presented during the evening poster session on the first day of the conference. A typical demonstration will illustrate one or more aspects of an innovative population/public health surveillance system that is in use or under development. Demonstrations of open source and/or free products are strongly encouraged. System showcase demonstrations are not intended to be marketing or sales presentations and such submissions will be rejected; those interested in supporting the ISDS conference with an exhibit booth should contact Tera Reynolds at ISDS for more information. When submitting an abstract for a system showcase demonstration, include the following components:

· Title (85 characters MAX)

· Objective

· Introduction

· Description, highlighting benefits to public/population health surveillance and how this demonstration will be a unique addition to the ISDS conference

· Conclusions, including lessons learned and design principles from this demonstration that attendees can take away, even if not using or intending to use the system demonstrated

· Names of demonstrators and affiliations

· Brief summary (600 characters/100 words) of showcase to be used in conference program

Track Descriptions

I. Analytical Methods

a. Analytical Methods: Applied

b. Analytical Methods: Research & Development

This theme is focused on important and novel advances in the field of surveillance methodologies and analytical approaches. Abstracts in the Applied sub-track should describe methods or processes routinely used in a production-type environment. Abstracts in the Research and Development sub-track should describe methods and processes still under development or tested within a research or pilot setting. Possible topics include, but are not limited to:

· Analytic evaluation of surveillance components

· Decision support

· Estimating morbidity and impact

· Evaluation of algorithms and systems through epidemic simulation

· Geospatial analysis

· Innovative use of Geographic Information Systems (GIS) technology

· Integrating evidence from multiple sources

· Integration of mathematical modeling and statistical analyses

· New algorithms and evaluation of existing algorithms for cluster and event detection

· Pattern recognition algorithms

· Predictive disease modeling/predictive analytics

· Spatial cluster detection

· Statistical methods and tools for analyzing and interpreting data

· Time series analysis

II. Informatics

a. Informatics: Applied

b. Informatics: Research & Development

Abstracts in the Applied sub-track should describe methods or processes routinely used in a production-type environment. Abstracts in the Research and Development sub-track should describe methods and processes still under development or tested within a research or pilot setting. Possible topics include, but are not limited to:

· Advances in methods for classifying data

· Approaches to building interoperable surveillance systems and components

· Borderless data exchange models (e.g. federated information sharing approaches)

· Cloud computing for public health surveillance

· Data integration – acquiring, moving, storing, processing, coding, normalizing, and preparing data for analysis between systems

· Data quality

· Data visualization methods

· Electronic health records and public health surveillance

· Health information exchange

· How clinical information systems can support public health surveillance efforts

· How public health information systems can support clinical efforts

· Informatics lessons learned

· Information and knowledge exchange

· Innovations in public health informatics

· Mobile technologies for public health

· Natural language processing

· Standards and Interoperability Framework (Public Health Reporting Initiative)

· Standards used in public health surveillance

· System architectures for limited connectivity environments and disaster surveillance

· System architectures for surveillance in low-resource environments

· System architectures to leverage HIE for public health surveillance

· System descriptions of real-world solutions to challenging integration problems

· Workforce requirements and training

· Use of social media for biosurveillance

III. Policy (at local, state, federal, international levels)

This theme is focused on sharing successes, challenges or approaches leveraged in the use or development of policy which affects biosurveillance operations and activities. Possible topics include, but are not limited to:

· Creating successful surveillance partnerships

· Data sharing policies

· Federal policy agendas

· Funding strategies for surveillance

· How public health surveillance data have been used to inform policy

· International Health Regulations

· Legal/ethical/security/privacy issues in surveillance

· Meaningful Use responses by public health departments

· Policies around social media/leveraging social networks for risk communication, etc.

· Research collaborations to expand evidence-based health policy

· Workforce

IV. Public/Population health surveillance

a. Public/Population Health Surveillance: Practice

b. Public/Population Health Surveillance: Research

c. Public/Population Health Surveillance: Evaluation

This theme is focused on improving the daily processes of timely public/population health surveillance, including detection, signal validation, event characterization, investigation, and response. Abstracts in the Practice sub-track should describe practices routinely used in a production environment and/or deployed in field by public health departments or other agencies. Abstracts in the Research sub-track should describe research related to surveillance, health systems, etc. Abstracts in the Evaluation sub-track should describe evaluations of public/population health surveillance systems, workflows, protocols, etc. Possible topics include, but are not limited to:

· Adverse drug events and pharmacovigilance

· Case studies

· Chronic disease surveillance

· Collaboration success stories

· Contact tracing and network analysis

· Disaster/event surveillance

· Disparities surveillance

· Evaluation of surveillance systems

· Infectious disease surveillance

· Influenza-like illness surveillance

· Injury surveillance

· Innovations in biosurveillance

· Integrating surveillance across multiple data sources

· Integrating surveillance systems, e.g. syndromic and reportable diseases

· Linking response with frontline health workers

· Meaningful Use and how it’s changing/not changing surveillance practice

· Measuring vaccine efficacy, coverage, etc.

· Messaging/risk communication (what to say to the public, politicians and media about syndromic systems alerts)

· Mobile technologies for public health

· Novel approaches to communicable diseases surveillance and reporting (e.g., notifiable conditions, MRSA, nosocomial infections)

· OneHealth

· Outbreak detection, characterization and outbreak management

· School and university surveillance

· Situational awareness

· Social media and surveillance

· Surveillance across borders

· Surveillance for refugees and recent immigrants

· Surveillance in resource-limited settings

· Surveillance using ambulatory care data

· Surveillance using inpatient data

· Vaccine-preventable disease surveillance

Biostatistician, Health Services Researcher, Informatician, Information Scientist, Nurse Researcher, Physician Researcher, Policy Analyst, Public Health Expert, Public Health Worker, Public Servant, Technologist
Call for Short Papers: 9th International Conference on Disability, Virtual Reality and Associated Technologies
France
05/31/2012

Call for Short Papers: 9th International Conference on Disability, Virtual Reality and Associated Technologies

September 10–12, 2012 Laval, France

Papers are encouraged in all areas that span Disability, Virtual Reality and its Associated Technologies, encompassing both practical application and more generic research.

The following topics are just a few of those that will be relevant to the conference:

Virtual and enhanced environments
Motor rehabilitation
Clinical assessment
Cognitive rehabilitation
Communication and language
Ambisonics and audio environments
Haptic devices
Sensory impairment
Medical systems
Input devices, sensors and actuators
Multi-user systems for user interaction
Computer access
Virtual humans
Balance, posture and mobility
Communications aids
Tools for architectural/CAD design
Product design, testing and prototyping
Training tools for rehabilitation
Augmented reality applications
Human factors
Rehabilitation robotics
ArtAbilitation

Short Papers (Poster Presentation) - Direct Submission - Review and Acceptance Notification

Short Papers can be submitted for review in final conference ready format by May 31, 2012.

Short Papers submitted after February 29, 2012 must be submitted in final conference format (see Section 4 below).
The format is the same as for final Full Papers but is limited to 4 pages maximum.
See below for link to the paper format and template.

Short Papers will be reviewed by three members of the Programme Committee.
Authors will be notified of the outcome of the reviews by June 20, 2012.

There will be a limited opportunity for revision/clarification of Short Papers after review.
The final submission deadline for accepted Short Papers is July 1, 2012.

Biomedical Engineer, Computer Scientist, Neuroscientist, Speech Pathologist, Technologist
Call for Abstracts: Diabetes Technology Meeting
United States
Maryland
07/01/2012

Call for Abstracts: Diabetes Technology Meeting

November 8-10, 2012 Bethesda, Maryland

Submit online to: http://www.diabetestechnology.org/abstract_submission_form.shtml

Deadline for submission: July 1, 2012

Acceptance Notification: Late August 2012

Abstract Topic Areas:
Researchers are encouraged to submit an Abstract of their work on diabetes technology, including but not limited to any of the major topics of the meeting:

Glucose monitoring
Insulin and metabolic peptide delivery
Artificial pancreas
Bioartificial pancreas
Cell phone management
Bolus dose calculation
Information technology
Physiologic monitoring
Software for modeling
Hypoglycemia detection
Diagnostic tests of glycation
Insulin pump and pen therapy
Diabetes telemedicine
Improving adherence to therapy using technology
Tests for complications
Technology for managing obesity

Selection Criteria
• Material must not have been presented or published previously.
• The subject area selected will be varied so that a balanced program can be produced.
• All applications must be submitted using the online submission process.

Biomedical Engineer, Endocrinologist, Pharmacist, Pharmacologist, Physician Researcher, Technologist
Call for Papers: Third International Conference on Global Trends in Biomedical Informatics, Research Education and Globalization
United States
New Jersey
09/01/2012

Call for Papers: Third International Conference on Global Trends in Biomedical Informatics, Research Education and Globalization

Organized by the Department of Health Informatics, School of Health Related Professions, University of Medicine and Dentistry of New Jersey (UMDNJ)

It is our great pleasure to invite you to participate in the Third International Conference on Global Trends in Biomedical Informatics, Research Education and Globalization which will take place on November 15th, 2012 in Newark, NJ, USA.

This conference will provide a unique opportunity for disseminating the latest advances, applications and future trends in the area of Biomedical Informatics. The conference will meet the diverse interests of the delegates - from conceptual, theoretical, practical applications to commercialization. It will be the center of action for health informatics professionals to interact with their peers, meet leaders in the field, learn about new products, and see demonstrations from top healthcare systems and services vendors.

We are inviting original, unpublished research manuscripts in the following areas of interest, but not limited to

Electronic Health Records and Meaningful Use
Healthcare Outcomes Research
Personalized Medicine, Genetic Testing & Biomarkers
Interoperability and Standards in Healthcare
Public Health Informatics, GIS Applications, Disease Mapping & Surveillance
Clinical Informatics including Decision Support & Intelligent Systems
Healthcare Marketing and Outsourcing
Molecular Imaging & Nanomedicine
Privacy, Security and Confidentiality
Healthcare System Intrusion including Bio- and Cyber-Terrorism
Healthcare Disparities Research
Drug Discovery and Clinical Trials
Bio-computations
Nursing Informatics
Modelling and Simulation in Biomedical Research.
Translational Research in Healthcare including Bioinformatics Applications
Controlled Medical Terminologies & Ontologies
Healthcare Quality Research
Intelligent Systems
Mobile devices in Health care
Biomedical Instrumentation, Devices and Signal processing
Telemedicine Applications including Mobile Devices, Health Information Exchange & Service Oriented Architecture for Healthcare

Selected papers will be submitted for publication in the

International Journal of Telemedicine and Applications
International Journal of Medical Engineering and Informatics
International Journal of Biomedical Engineering and Consumer Health Informatics
International Journal of Computational Intelligence and Healthcare Informatics

Highlights of the Conference

State-of-the-Art Overviews by Renowned Experts
Presentation of Scientific and Application Papers
Panel Discussions Exploring Critical Issues of the Day
Demonstrations of Advanced Health Informatics Systems
In-depth Tutorial Sessions in Current State of Art Biomedical Informatics by Eminent Speakers

We are looking forward for your participation to make this event a grand success

Important Deadlines:

Manuscript Submission: September 1, 2012
Decision on Paper Acceptance: September 30, 2012
Submission of Final Manuscript: October 30, 2012

CONTACT DETAILS
Dr. Syed Haque
Chair & Program Director

Ms. Yvonne Rolley
Conference Coordinator
Department of Health Informatics
UMDNJ-School of Health Related Professions
65 Bergen Street, Rm.350
Newark, NJ 07107-3001
Phone: 973 972 6871, Fax: 973 972 8540

Epidemiologist, Health Services Researcher, Informatician, Information Scientist, Nurse, Nurse Researcher, Physician Researcher, Public Health Expert, Public Health Worker, Public Servant, Technologist
Call for Papers: Fifth International Symposium on Semantic Mining in Biomedicine (SMBM 2012)
Switzerland
06/08/2012

Call for Papers: Fifth International Symposium on Semantic Mining in Biomedicine (SMBM 2012)

September 3rd and 4th, Institute of Computational Linguistics, University of Zurich, Switzerland

SMBM 2012 aims to bring together researchers from text and data mining in biomedicine, medical, bio- and chemoinformatics, and researchers active in biomedical ontology design and engineering, and the Semantic Web. The combined research helps to promote full integration of data and factual content from large text collections, biological databases, ontological and terminological resources, and from the Web.

However, many challenges have yet to be met to achieve this ambitious goal. Significant advances have been made and many working systems for tasks ranging from semantics driven literature analysis to cross-resource data analysis and open linked data on the web have been suggested and deployed. Where do we stand and how do we advance toward fully integrated systems combining the different solutions and data sources?

We are inviting papers from a full range of topics (see below), emphasizing in particular work on methods deployed in a production-like research environment, user-facing applications of text mining technology, the integration of text with domain resources such as content from reference databases (e.g., UniProt, EntrezGene, OMIM) and semantic resources such as GO, UMLS etc. We also welcome contributions from across the biomedical domains, including genomics, translational medicine, clinical practice, and public health.

Topics of interest include (but are not limited to):

Development and use of biomedical semantic resources

Terminology and ontology development for biomedical information systems including terminology evolution

Integration of text and data mining in the biomedical domain

(Semantic) Web mining of biomedical information

Text mining, information extraction, and information retrieval for the biomedical domain

Evaluation techniques and standards for text mining solutions

Annotation schemes for biomedical corpora

Text mining for resource building, e.g. ontologies, and resource enrichment, e.g., biomedical databases

Representation and discovery of biomedical domain knowledge

Image/caption processing in relation to content extraction

Domain-specific reasoning processes, e.g., to infer non-explicit information, validation (trust-worthiness, believability, safety) of extracted information

Integration of text mining in biological database curation workflows

All accepted papers will be published in the conference proceedings that will be available online. We invite three categories of papers: full research papers, short papers and system papers. Research papers will be given an oral presentation, short papers a poster presentation, and systems papers will be presented in systems demonstration sessions. System papers should describe an implemented system related to a topic of interest that the authors will demonstrate live during the symposium. The final modality of presentation will be decided by the organizing committee.

Authors of selected papers will be invited to submit an extended version for publication in a special issue of an open-access journal (details to be announced).

Submissions should follow the ACL instructions for authors, with a maximal limit of seven (7) pages (plus one optional page for references). The recommended length for system papers and poster submissions is four (4) pages. Manuscripts will be submitted electronically as PDF files. Reviewing will be double-blind, and submissions should therefore NOT contain author names or other obviously identifying information.

SMBM 2012 is the follow-up to to the successful series:

SMBM 2005 (EBI, U.K.), SMBM 2006 (University of Jena, Germany), SMBM 2008 (University of Turku, Finland) and SMBM 2010 (EBI, U.K). A parallel event (LBM: The International Symposium on Languages in Biology and Medicine) has been held in 2005 (KAIST, Daejeon, South Korea), 2007 (Matrix, Biopolis, Singapore), 2009 (Jeju Island, South Korea) and 2011 (NTU, Singapore).

Important dates
Paper submission deadline: June 8th 2012
Notification of acceptance: July 1st 2012
Symposium dates: September 3-4th 2012

Bioinformatician, Computer Scientist, Informatician, Information Scientist, Molecular Biologist, Physician Researcher
Call for Papers: Association for the Advancement of Artificial Intelligence 2012 Fall Symposium on Information Retrieval and Knowledge Discovery in Biomedical Text
United States
Virginia
05/25/2012

Call for Papers: Association for the Advancement of Artificial Intelligence 2012 Fall Symposium on Information Retrieval and Knowledge Discovery in Biomedical Text

November 2-4, 2012 Arlington, Virginia

Submission Deadline: 25 May 2012

The amount of biological and medical literature has grown exponentially within the last decade. This data may be in the form of journal citations in PubMed, in the form of clinical summaries in healthcare institutions or in the form of blogs and user comments that express personal opinions on the different healthcare topics such as drug adverse effects or disease treatments. This material, be it expressed by researchers, medical professionals or medical care receivers, is of significant importance in terms of the wealth of information that it possesses. However, it is only valuable if efficient and reliable ways of accessing and analyzing that information are available.

In this symposium we would like to address novel research on computational techniques for information retrieval and knowledge discovery from biomedical and clinical texts, with a focus on machine learning and/or natural language processing, as well as novel applications of existing techniques to the open problems in text processing in biomedical domain. We will invite several speakers from the biomedical text processing community who will present current research problems in this field, and we will invite contributed talks on novel learning approaches that can improve the analysis and retrieval of biological and medical information.

We solicit two types of submissions to the symposium:

1. Contributed talks and/or posters
We invite submissions that address new algorithmic and methodological contributions to the spectrum of problems in biomedical text analysis, where textual resources can include semi-structured and unstructured biomedical text, clinical text, social media and any other healthcare related text media.

2. Open problems
For open problems, we request the authors to submit a one page description that motivates and explains an existing open problem in text analysis and information retrieval in biomedical domain. The main goal here is to foster active discussion.

Papers for the symposium will be collected and made into an AAAI technical report, which will be distributed to attendees on CD and included in the AAAI Digital Library. The issuance of technical report allows the work to be cited.

IMPORTANT DATES
Paper Submission Deadline: May 25, 2012

Notification of acceptance: June 22, 2012

Camera-ready papers : September 7, 2012

AAAI 2012 Fall Symposium: November 2-4, 2012

If you have any questions, do not hesitate to direct your questions to
Rezarta.Islamaj@nih.gov or Lana.Yeganova@nih.gov

AAAI 2012 Fall Symposium Organizers:
Lana Yeganova, PhD, Staff Scientist, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health.

Rezarta Islamaj Dogan, PhD, Research Fellow, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health.

Vahan Grigoryan, PhD, Associate, Cloud Analytics Group, Booz Allen Hamilton.

Mark Dredze, PhD, Assistant Research Professor, Department of Computer Science and the Human Language Technology Center of Excellence, Johns Hopkins University.

Computer Scientist, Informatician, Information Scientist, Physician Researcher
Call for Papers: First Workshop on Maintainable Software Practices in e-Science
United States
Illinois
06/18/2012

Call for Papers: First Workshop on Maintainable Software Practices in e-Science

Co-located with
8th IEEE International Conference on eScience, Chicago, Illinois

October 8-12, 2012

The 1st Workshop on Maintainable Software Practices in e-Science, co-located with the 8th IEEE International Conference on eScience, provides a dedicated forum for the research community to discuss new research, experiences and best practice in developing and maintaining software within an e-Science context.

One of the most pressing issues for computational science is the creation of software and data that is sustainable and reusable. Today’s researchers are using more and more complex software stacks that is produced in increasingly ad hoc ways [Mer10]. Software development has become more and more common (current estimates state that 45% of scientists spend more time developing software now than they did 5 years ago [Han09]), particularly within e-Science projects which often have a mix of research and software development roles. At the same time, stakeholders are asking researchers to consider their software sustainability as part of their data management plans, with “Software as Infrastructure” being adopted as a model [EPSRC11, NSF11]. The management, curation and development of scientific software – which has often started life as a rough prototype – is a key area to support to enable high quality research.

This workshop will focus on the issues relating to the development and maintenance of software that can endure past the limited periods of defined project durations and project funding, and go beyond software engineering best practice to address aspects of cultural, organisational and policy change. By bringing together all those with an interest in ensuring the longer term development and use of software for research, including researchers, developers, research computing specialists, software engineers, infrastructure providers, facilitators, and funders, the goal of this workshop is to understand what software practices can be successfully applied and which lead to long-term improvements in the development of software for e-Science.

As part of the workshop we will also be running a panel on the topic of culture change in software management for research, featuring invited speakers from a variety of disciplines who have experienced or instigated these changes, to talk about their real life experiences of scientists of what worked and didn’t work for them.

Topics of Interest
We invite the submission of original work that is related to the topics below. The papers can be either short (5 pages) position papers, or full (10 pages) research papers.

Topics of interest include:

software engineering and software product management best practice as applied to e-Science and computational science;
community development, collaborative development, and widening adoption;
licensing, funding, and business models for eScience and research software;
managing governance and organisational change during the software lifecycle;
measuring and analysing the impact of software and software processes;
software attribution, citation, and credit;
interaction between researchers, developers and stakeholders;
transferable software practices from industry.

Submission Instructions

Important Dates

Abstract Due: June 18th, 2012
Papers Due: July 2nd, 2012
Notification of Acceptance: August 13th, 2012
Camera Ready Papers Due: August 31st, 2012
[EPSRC11] “Software As An Infrastructure”, EPSRC Strategic Framework (draft for comment), Published online 24 November 2011, http://www.epsrc.ac.uk/SiteCollectionDocuments/ourportfolio/SoftwareAsAnInfrastructureDRAFT.pdf

[Han09] Hannay, Jo, et al., “How do scientists develop and use scientific software?” Proceedings of 2009 ICSE Workshop on Software Engineering for Computational Science and Engineering, p1-8, 2009 | doi: 10.1109/SECSE.2009.5069155

[Mer10] Merali, Zeeya, “Computational science: Error…why scientific programming does not compute”, Nature 467, 775-777 (2010) | doi:10.1038/467775a, Published online 13 October. 2010, http://www.nature.com/news/2010/101013/full/467775a.html

[NSF11] National Science Foundation Advisory Committee for Cyberinfrastructure Task Force onSoftware for Science and Engineering Final Report, March 2011 http://www.nsf.gov/od/oci/taskforces/TaskForceReport_Software.pdf

Computer Scientist, Informatician, Information Scientist, Scientist, Technologist
Call for Abstracts: Advances in eHealth 2012 Workshop
United States
Illinois
07/04/2012

Call for Abstracts: Advances in eHealth 2012 Workshop

The workshop provides a forum for eHealth researchers from multiple disciplines to share current advances and research on increasing the effectiveness and adoption of technology in healthcare in the coming decade. This ranges from the use of sensor devices, human-computer interfaces, to cloud based medical record systems in order to provide radically new solutions for helping patients. At the same time medical informatics and large scale genomics data analysis are playing major role in clarifying the opportunities for personalized medicine applications. Biobanks as the back end of data-driven biomedical science open the possibilities for studying genetic and environmental influences over time, accelerating the pace of biomedical research. On other hand, ongoing efforts toward a global sharing of digital healthcare data will pave the way to maximize the potential for knowledge discovery.

These advances require structural changes as well as technological development. Society is facing an increase in chronic degenerative diseases that require monitoring and long-term patient management, the growing desire of patients to be treated in a family environment in order to protect their social ties, and, finally, a need to reduce costs. These factors necessitate a new strategic orientation in services and infrastructures for supporting these services. Both the shift towards networked sensors and cloud-based systems also require new security concepts to facilitate secure and effective use of these systems.

We are looking for papers that address medium to large-scale and medium to long-term challenges for eHealth and potential solutions.

The workshop is part of the eScience2012 conference (http://www.ci.uchicago.edu/escience2012), 8-12 October 2012, Chicago, USA.

Workshop twitter hashtag: #aeh2012

Topics of interest include but not limited to:

Medical Simulations
Computing Infrastructures for eHealth
Data Storage, Transfer, and Indexing Systems for eHealth Applications
Security & Privacy for eHealth
HCI (Human-Computer Interaction) for eHealth
User Studies of eHealth Systems
Electronic Health Record (EHR) Systems and Applications
Bio-banking and eHealth
Data Mining and Applications for Personalized Medicine

Workshop format
The workshop will include invited speakers, paper presentation sessions and a tentative panel discussion.

Organizing Committee
Rossen Apostolov, KTH Royal Institute of Technology, Sweden
rossen@kth.se
Matthew Smith, Leibniz University of Hannover, Germany
smith@dcsec.uni-hannover.de
Tristan Glatard, CREATIS, Medical Imaging Research Center, Lyon, France
tristan.glatard@creatis.insa-lyon.fr

Important dates
Abstract submission: 4 July 2012
Paper submission: 11 July 2012
Paper author notification: 22 August 2012
Camera-ready papers due: 10 September 2012
Conference: 8-12 October 2012

Submission guidelines
Authors are invited to submit papers with unpublished, original work of not more than 8 pages of double column text using single spaced 10 point size on 8.5 x 11 inch pages, as per IEEE 8.5 x 11 manuscript guidelines. (Up to 2 additional pages may be purchased for US$150/page). Templates are available from http://www.ieee.org/conferences_events/conferences/publishing/templates.html.

Authors should submit a PDF file that will print on a PostScript printer to https://www.easychair.org/conferences/?conf=aeh2012

(Note that paper submitters also must submit an abstract in advance of the paper deadline. This should be done through the same site where papers are submitted.)

It is a requirement that at least one author of each accepted paper attend the conference.

Computer Scientist, Informatician, Information Scientist, Nurse Researcher, Physician Researcher, Technologist

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